rs27425042 SNP Detail

Summary

• ID
  rs27425042
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121406114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTTAAAA AAGTTTAACA
  TGGCAACCAG AACAGGCCAG GCTTCCTTTC AAAAAGAAAG GGGGACTCTC TGGGTGCCTC
  ATGATGCACG AGCTCTTTCT GCACTCCCCA TTTGACTGGT ACAGGAATGG CCCCCCTCAG
  AGTCAGTGCC CTCGAGGGGT TCACTTTCCC ATCTTAGCAC AGGTCTGACA CTTCTCCTGC
  Y
  AGCAAGCTCT TTGCAAATTC TCCATTAGTT GCTTCTGAGA GTTCCCTGAC TCATAATCAG
  GGGTTCACGG TTTTTTTTTA ATGGAAACTT CATGGTCTTA TGTCCAAAAC AATCCTGTGG
  TTAATGACAG TTTTAGGCAG GAGGACTAAG AAAATTCTGA GGTGGCTCTT GAGTGCTCTC
  AGCGTTTTGT GAGAGAAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37645461	NES09016065	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27425042					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37645461	NES09016065	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121406114 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frmd5	FERM domain containing 5			Intron
				Noncoding-Transcript-Variant
Rr373770	regulatory region 373770			399 bp upstream
Rr563854	regulatory region 563854			1042 bp distal
Rr563855	regulatory region 563855			127 bp proximal