rs27424549 SNP Detail

Summary

• ID
  rs27424549
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119725929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAGGGTGA GCAAGCTGTA
  AATCTTGTCA CCTGTAGGGA GATGGAGTTG TAAGAAAGTC ATGCCTTTTG AGTCAGCAAT
  GGAGGTCTGC AAGAAGCTCT AGAAATTGTG AGAAGAGGTC TTCAGAGAAA ACAATGAGAA
  AGCCCTGAAT GTGAGGGCAG ACATTCTTAG GATTTTGGGA AAGTGATTGA CAATATGCTC
  R
  GGAAACTAGC TACTCAGTAA TGAAAATCAG TAATTGTTGA AAATTGAAAT CTGGTATTTC
  ATGTTTGCTT GGAGCAGGGA AAGAGCACCA AAGAGCATTT CTGTTGTACT TTCCCATGCA
  AGTTGTTCTC GTAGATTTTT CCAATTAGAG ATGCTATTTG GGTTGTCTTT TTTTGAGATG
  CTACCGAGTC ATTCATACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37649570	NES09023785	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	G		A	A	G	A	G	A	A	G
ss45226292	mCV24941039	ABI	CRAMUS_MOUSE	f	SNP		G	A					A
ss147345327	ENSMUSSNP288101	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27424549					SNP	G	G	A	A	A	G	G	A	A	A	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37649570	NES09023785	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119725929 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930485G23Rik	RIKEN cDNA 4930485G23 gene			within coordinates
Cpgi12132	CpG island 12132			1440 bp proximal
Gm75581	predicted gene, 75581			within coordinates
Gm75585	predicted gene, 75585			236 bp downstream
Mga	MAX gene associated			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr563600	regulatory region 563600			1087 bp proximal
Rr563601	regulatory region 563601			1699 bp proximal
Rr563602	regulatory region 563602			1791 bp proximal
Tssr19669	transcription start site region 19669			1764 bp upstream
Tssr25831	transcription start site region 25831			1672 bp downstream