rs27423090 SNP Detail

Summary

• ID
  rs27423090
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:120805895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAA TCTACCCTGA AATGTTTTTG
  Y
  CAGCCTAACC TCCATTGTTA TCTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37646614	NES09015956	PERLEGEN	MM_PANEL2	f	SNP	C		C	C			T	C	C	T		C
ss147374554	ENSMUSSNP4778576	ENSEMBL	ENSEMBL_Sanger	f	SNP		C			C
ss320480944	CHEV_2_120801150	CHEVERUD	SCREENING_POP	f	SNP						T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27423090					SNP	C	C	C	C	C	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37646614	NES09015956	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120805895 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12148	CpG island 12148	1528 bp proximal
Gm74862	predicted gene, 74862	1765 bp downstream
Rr563749	regulatory region 563749	567 bp proximal
Rr563750	regulatory region 563750	790 bp proximal
Rr563751	regulatory region 563751	1101 bp proximal
Rr563752	regulatory region 563752	1113 bp proximal
Rr563753	regulatory region 563753	1623 bp proximal
Rr563754	regulatory region 563754	1629 bp proximal
Rr563755	regulatory region 563755	1695 bp proximal
Tmem62	transmembrane protein 62	1603 bp upstream
Tssr19722	transcription start site region 19722	1667 bp upstream
Tssr19723	transcription start site region 19723	1734 bp upstream
Tssr19724	transcription start site region 19724	1834 bp upstream