rs27422904 SNP Detail

Summary

• ID
  rs27422904
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:120872802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAGGTTAAG TAAGGTACAG CATAACCTGC TGTCCACACA
  CTGTCCACAT GTCTCTGCAG CCACTCACAT GCTGTCCACA TGCAGTCCAC ACGACATTCA
  Y
  ATGCCACCCA CATACCACCC ACATGCTATC CATATGCTGT CCACACACTG TCCTTGTGGT
  GTCCATGTGC CACCCACATG CTGTCCTTAT GGTGTCCACA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss37646423	NES09026694	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs27422904					SNP	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37646423	NES09026694	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120872802 () rs orientation: forward

Symbol	Name	Function Class
Rr563767	regulatory region 563767	939 bp distal
Rr563768	regulatory region 563768	1028 bp distal