rs27421872 SNP Detail

Summary

• ID
  rs27421872
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:125337046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATCATGATT AGTCTGTCTA AAAAGGAAAA GGTAAAAGAG
  GAAGAAGTCA AGGAACAAAG ATGGCAATGA GGAAGAGGTG AAAGGAAAGA AAATCGTCCC
  Y
  GGGCATAGGC TCTTCCTTAA TACAGAGATC GTCATGAAAT TTGACCACAG ACCGAGTGTA
  TCCACAGGGC TGACATAAAT CCTGTCTCCC AACACCAGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss37634592	NES09004274	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs27421872					SNP	T	T	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37634592	NES09004274	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125337046 () rs orientation: forward

Symbol	Name	Function Class
Fbn1	fibrillin 1	Intron
Rr1394	regulatory region 1394	1216 bp distal
Rr564223	regulatory region 564223	916 bp distal
Rr564224	regulatory region 564224	17 bp proximal
Rr564225	regulatory region 564225	1603 bp proximal