rs27421831 SNP Detail

Summary

• ID
  rs27421831
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125372574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCTCTGT GGAGCCATGG
  CTGTCCTGAA ACTCACTATA TAGGCCAGGC TGGCTTGGAA CTCAGATCTG CCTGCCTCTG
  CTTCCCAAGT GCTGGGATTA AAGAGGTGAG CCACCATGGG CGGCCTTTCA CACCTCTGCT
  GTAGAGAACG GGAAGTAAAA TCGGCTGTAT CTGGAACCCG TGCTCCACAC ACGGGGTTCC
  W
  GTATGGCTGG AGAGGGACCA TCATTCAGGG GTAAAGACTT GCTGGAATGT TGACAGTTTC
  CTTCCCTAAC CCTCTGTGAC AGATAGCATG CTGTGTGAAG AGCCCGGCAC AGCGGGGTGA
  CCTCATCCTT AGTAGAATTC CCTCAAGCCT GCACAGTCAC TGTTTAATTT CCAGCCAAGG
  CAATATCACC CCTCCCAGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss37634551	NES09003132	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs27421831					SNP	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37634551	NES09003132	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125372574 () rs orientation: forward

Symbol	Name	Function Class
Gm75244	predicted gene, 75244	within coordinates
Rr564232	regulatory region 564232	within coordinates