rs27421821 SNP Detail

Summary

• ID
  rs27421821
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125373707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCCTTCA GACCTTCTGT
  TCTCTAAAAT CCATCAAGTT CCTCATCTTT ACTTCTTGTG AGATTTCCAC AGTGCCTGGG
  CATGCTGTGA AAGCCAAGGA GGAGGGGCGC CTGGAATACT TTGCAGCTAT GTATGGGGCA
  TTCTTTCTGA GCATTTCAGT CCAGGGCACA CAGGAGGAAA CTTCCAAAGG TGAAGTCTCA
  R
  CATTTCTGCT GGTCCCCACT GAGTTTGTGT CAAGAAACAC ACACATACAG AAAGAGAGAT
  GGGGGGTATT TTTACTTCAT TTCTGTCTGT TTATGGGGGA TTTTCCTGCT GTTAGAGGGT
  GGAAAAATAA ATGATTACTC ACAAACATCT ACTTCAGCCC AAGACTCACT CTCATCTCCA
  AGATTCCCAC TCCCATTGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss37634541	NES09003148	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	G		A	A	A	A
ss147480367	ENSMUSSNP5119482	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs27421821					SNP	A	A	A	A	A	A	G	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37634541	NES09003148	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125373707 () rs orientation: forward

Symbol	Name	Function Class
Gm75244	predicted gene, 75244	within coordinates
Rr564232	regulatory region 564232	799 bp distal