rs27418974 SNP Detail

Summary

• ID
  rs27418974
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:125698857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCTTGTAG ACTTTCTATA
  AAAAGAAACA GATAAAGATC CAGGCAAAAT AATTACTCAA ATAAAAGAAA CCCATCTCTA
  GCAGCTATGG AATGACAGCC ACCCTCATCC TTTCAAACAC GCAGGACATG GGCATCAGTT
  ACCAGAAAGA CATCACGTGC CAAAAATTTT AACTGTTAGT AAAAGAGATA TAACACCTTT
  Y
  ACTACTTGAC ATATAGCTGG GAATCTAGAA TAGTATCTAC ATGAAAAATG GATGAGAAGA
  GCTATTTAAT TTCACATAAT GCCCAGAGAA GAAAATAAAA ATTTCATTAG TTTTGCAACA
  GTAAAATCTT AACTCTAAGT TTTTTTTTTT TTTAAAGCTG AAACAACTGC ATATTCAACT
  TTATTTAGGA TACATTTAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37633394	NES09011504	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27418974					SNP	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37633394	NES09011504	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125698857 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cops2	COP9 signalosome subunit 2			Intron
				Noncoding-Transcript-Variant
Cpgi12203	CpG island 12203			1538 bp proximal
Rr564285	regulatory region 564285			974 bp proximal
Rr564286	regulatory region 564286			1378 bp proximal