rs27418971 SNP Detail

Summary

• ID
  rs27418971
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:125699384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATTCCTACA CTGTACTTTT AAGTTAATCC CAGTGCTAAT
  ATTCATTTAT CTAAAAGTTC ATGTATTTCA TAGACTATTA GGAAAGGAGG TAAGTGAAAA
  W
  TTTAAAAACA CTACCAGCTA AAATTACAAA CATTCAAAAG AAATATCTGA CAATTTAAAA
  ACTACTTGTA ATGGAAACAA AAGCAAAACA AGAGTTTAG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37633391	NES09011491	PERLEGEN	MM_PANEL2	f	SNP	T				T		T	A	T
ss45343555	mCV23888329	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	T		A
ss147488956	ENSMUSSNP5182921	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27418971					SNP	T	T	T	T	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37633391	NES09011491	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125699384 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cops2	COP9 signalosome subunit 2			Intron
				Noncoding-Transcript-Variant
Cpgi12203	CpG island 12203			1011 bp proximal
Galk2	galactokinase 2			1645 bp upstream
Rr367292	regulatory region 367292			1488 bp upstream
Rr564285	regulatory region 564285			447 bp proximal
Rr564286	regulatory region 564286			851 bp proximal
Rr564287	regulatory region 564287			1565 bp proximal
Tssr19907	transcription start site region 19907			1699 bp upstream
Tssr26026	transcription start site region 26026			1521 bp downstream
Tssr26027	transcription start site region 26027			1734 bp downstream