rs27418970 SNP Detail

Summary

• ID
  rs27418970
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:125700001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAAAGAAA AGAAAAGAAA AGAAAAAAGA CGACCCAGAC
  TTCTCCAAGC ATGTACACCA CAGCTTGCAC TATCATCGGA TTTTTCTAAA AACCGAACAA
  W
  TGCTTCCCAA TTAAGAAACA AAACTGACAC TAATTTTGGG ATCAAGATAA TTTTCTTAGT
  TCTTACACAG GCATGCGTTT TGGACTATCA ACATAAATC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37633390	NES09011432	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	A	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27418970					SNP	T	T	T	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37633390	NES09011432	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125700001 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cops2	COP9 signalosome subunit 2			Intron
				Noncoding-Transcript-Variant
Cpgi12203	CpG island 12203			394 bp proximal
Galk2	galactokinase 2			1028 bp upstream
Rr367292	regulatory region 367292			871 bp upstream
Rr564285	regulatory region 564285			149 bp distal
Rr564286	regulatory region 564286			234 bp proximal
Rr564287	regulatory region 564287			948 bp proximal
Tssr19907	transcription start site region 19907			1082 bp upstream
Tssr26026	transcription start site region 26026			904 bp downstream
Tssr26027	transcription start site region 26027			1117 bp downstream