rs27418091 SNP Detail

Summary

• ID
  rs27418091
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127468883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCACACGTT GAAGGCTTGG TCACCAGGTT CTTGTGTTTA
  CAGAGGTAGT GGAAACTTCA GGAGGTAGAG CCAAGTGGAA AGAAGGCATT GAGGCTGTGT
  S
  CATGGTAAGG CTATTCTGCT ATGTGCTCTG GCCATCATGT ACTGTGCCAC CATATCCCCA
  AAGAAATAGG ACAAAAGACC ATCATGCACT GAAGCCTTGG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	CAST/EiJ	DBA/2J	WSB/EiJ
ss37628410	NES09012281	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	CAST/EiJ	DBA/2J	WSB/EiJ
rs27418091					SNP	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37628410	NES09012281	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127468883 () rs orientation: forward

Symbol	Name	Function Class
Rr564573	regulatory region 564573	770 bp distal
Rr564574	regulatory region 564574	1082 bp proximal