rs27418090 SNP Detail

Summary

• ID
  rs27418090
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127468890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTGAAGGCT TGGTCACCAG GTTCTTGTGT TTACAGAGGT
  AGTGGAAACT TCAGGAGGTA GAGCCAAGTG GAAAGAAGGC ATTGAGGCTG TGTCCATGGT
  W
  AGGCTATTCT GCTATGTGCT CTGGCCATCA TGTACTGTGC CACCATATCC CCAAAGAAAT
  AGGACAAAAG ACCATCATGC ACTGAAGCCT TGGTCACGGT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37628409	NES09012282	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	A	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27418090					SNP	T	T	A	A	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37628409	NES09012282	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127468890 () rs orientation: forward

Symbol	Name	Function Class
Rr564573	regulatory region 564573	777 bp distal
Rr564574	regulatory region 564574	1075 bp proximal