rs27414999 SNP Detail

Summary

• ID
  rs27414999
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129082070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACTTAATCA TGTTTTCTTT GTTCCTCGGG ATCCTGAGGA
  TGTCATATTA ACCTTTGGAT CAAGGGGCCT GGGCATTTGA GGTAGTCTGT CTGAACTTGT
  Y
  TCTCTGCACC GAGAGTTTAA TCAGGAAATC TAGCAAGATG CTCCAGTCAG TGCCTCAGTG
  ACCGTGCCTT CTGCAAATGC ACTTTTCCTT AGGGCTTAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37622619	NES08997594	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C	C	C	T	C
ss147584054	ENSMUSSNP1384263	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27414999					SNP	C	C	C	C	C	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37622619	NES08997594	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129082070 () rs orientation: forward

Symbol	Name	Function Class
Rr564886	regulatory region 564886	778 bp distal
Rr564887	regulatory region 564887	625 bp proximal
Rr564888	regulatory region 564888	1883 bp proximal