rs27414975 SNP Detail

Summary

• ID
  rs27414975
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129084628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGGTTAGG CTTGGTCACA AAGTCCTGCA TGGATCCAGG
  ATGACGTCAC CTGCTCCACA GCAGCCTCCA GGTTTGATCC GGTTTGAGCT GGATCTAACA
  S
  TAGCTGGTTA AAACAAAACT CTGACTGTTA TTACAAGAAT CGGGATGTGT CACAAGCACA
  GTGGCTCCCC TGACTTTACT AGTGGTGATG TCAGGTGTC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37622595	NES08997450	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	G	C	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27414975					SNP	C	C	G	C	G	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37622595	NES08997450	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129084628 () rs orientation: forward

Symbol	Name	Function Class
Rr373844	regulatory region 373844	within coordinates
Rr564887	regulatory region 564887	777 bp distal
Rr564888	regulatory region 564888	within coordinates
Rr564889	regulatory region 564889	302 bp proximal
Rr564890	regulatory region 564890	1041 bp proximal
Rr564891	regulatory region 564891	1930 bp proximal
Rr564892	regulatory region 564892	1945 bp proximal