rs27414972 SNP Detail

Summary

• ID
  rs27414972
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129084683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCACAGCAGC CTCCAGGTTT GATCCGGTTT GAGCTGGATC
  TAACACTAGC TGGTTAAAAC AAAACTCTGA CTGTTATTAC AAGAATCGGG ATGTGTCACA
  R
  GCACAGTGGC TCCCCTGACT TTACTAGTGG TGATGTCAGG TGTCATTTTG CAACCTGTAA
  CAGAGTCCTA AGTAACATCT TACTTCTAAA ATCCAGCAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss37622592	NES08997456	PERLEGEN	MM_PANEL2	f	SNP		A	A		G	G
ss147584190	ENSMUSSNP4385113	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs27414972					SNP	A	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37622592	NES08997456	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129084683 () rs orientation: forward

Symbol	Name	Function Class
Rr373844	regulatory region 373844	within coordinates
Rr564887	regulatory region 564887	832 bp distal
Rr564888	regulatory region 564888	within coordinates
Rr564889	regulatory region 564889	247 bp proximal
Rr564890	regulatory region 564890	986 bp proximal
Rr564891	regulatory region 564891	1875 bp proximal
Rr564892	regulatory region 564892	1890 bp proximal