rs27414971 SNP Detail

Summary

• ID
  rs27414971
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129084887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGAGGAAAT TCACTGAGTT ATTTGGAAAA CAAAAAACAA
  AAAAACAATA ACCAAAAAAC CCTACACGCC CCATCACAAG GAAATATTGC ATACATCACT
  Y
  TGTATGGTAG ACATTTGAAG TCATTAAAAG TCAAGTTACT GAGCTGGGGA GATGGCCTGT
  TGTGCCATAC AAGTGTGGGC CTGCACTTAG CACCCCAGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MOLF/EiJ	PWD/PhJ
ss37622591	NES08997459	PERLEGEN	MM_PANEL2	f	SNP		C		T	T
ss147584220	ENSMUSSNP4303570	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MOLF/EiJ	PWD/PhJ
rs27414971					SNP	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37622591	NES08997459	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129084887 () rs orientation: forward

Symbol	Name	Function Class
Rr373844	regulatory region 373844	within coordinates
Rr564887	regulatory region 564887	1036 bp distal
Rr564888	regulatory region 564888	116 bp distal
Rr564889	regulatory region 564889	43 bp proximal
Rr564890	regulatory region 564890	782 bp proximal
Rr564891	regulatory region 564891	1671 bp proximal
Rr564892	regulatory region 564892	1686 bp proximal