rs27414969 SNP Detail

Summary

• ID
  rs27414969
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129085654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTGGGGAA ACCAACCAAC CAACCAACCA ACCACCAAAC
  AAACAAAACA AGACAAGGAA AAACAAGCCC AACCTTCCGG TTTTCGGGCT AACCTGTTTG
  Y
  CTCTGCATTT ACAAAGTTTT GCAATTGTCC TGCTATGAGT GTGTAGTACT TCAGTCATCA
  CAAACAAGCA ATTGCCATTT AAAAGTCTTG AGCGGTCAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37622589	NES08997376	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T		T	C	T	C	T
ss147584260	ENSMUSSNP6055688	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27414969					SNP	T	T	T	T	T	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37622589	NES08997376	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129085654 () rs orientation: forward

Symbol	Name	Function Class
Rr373844	regulatory region 373844	681 bp downstream
Rr564887	regulatory region 564887	1803 bp distal
Rr564888	regulatory region 564888	883 bp distal
Rr564889	regulatory region 564889	138 bp distal
Rr564890	regulatory region 564890	15 bp proximal
Rr564891	regulatory region 564891	904 bp proximal
Rr564892	regulatory region 564892	919 bp proximal
Rr564893	regulatory region 564893	1775 bp proximal