rs27414968 SNP Detail

Summary

• ID
  rs27414968
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129086205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAAAACCAC ACGGGACCGA GAATAATTCA CTAATTCATA
  GTCCCGAGGT GGCAGGCAAC TATTGTTAAT TGTTCCTGCT CCCTTCCTGG TGTGTCCTGT
  R
  TCACATACAT TCAGACCTTG GCATCTGAGT AGTTGGAAGA GGCGACTTCT CAGAAGTTGC
  TCTGCCTGGG CACCAAAAAA AAAAAAAGAA AAAAAGAAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37622588	NES08997377	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G		G	A	G	A	G
ss147584275	ENSMUSSNP4390419	ENSEMBL	ENSEMBL_Sanger	f	SNP		G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27414968					SNP	G	G	G	G	A	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37622588	NES08997377	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129086205 () rs orientation: forward

Symbol	Name	Function Class
Rr373844	regulatory region 373844	1232 bp downstream
Rr373845	regulatory region 373845	1657 bp upstream
Rr564888	regulatory region 564888	1434 bp distal
Rr564889	regulatory region 564889	689 bp distal
Rr564890	regulatory region 564890	69 bp distal
Rr564891	regulatory region 564891	353 bp proximal
Rr564892	regulatory region 564892	368 bp proximal
Rr564893	regulatory region 564893	1224 bp proximal