rs27414606 SNP Detail

Summary

• ID
  rs27414606
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:104515343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGGCTCA TATATAGTAA
  GCACATTGCC AGCTGAGGCA TATCCCCAAC CTCTGCAGCT GTTTTGGTTG GTTTGGTTTT
  TTGAGACAGA AGACAGCTAA GGCTAGCTGT GGATTTCTGT TTTTCCTTTC AGGCGCTAGA
  GCAACTGACT GTCCTGGGGC CAAGGTCTAC GTTCCACTGG ATTCTCTAAG GTCATGGTAT
  K
  TACTGCTAGT TGAACAACTC AGTAGGTGCA AGTCAGTGGG GTGACTGGTT AGTAAATAAG
  ATTAAGTTAG AAAACAGGTT AAACATAGGA CAAGTTCTAC CTCGGGAGGT GTCTACTTCA
  GTCTATCTGT GTTAGAATGT TCTGGTCACA GCCACGTTGC TCATTGTGGG CTCTGAGCCT
  TTCAGACATT TGAAAACCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37619528	NES09074364	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27414606					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37619528	NES09074364	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:104515343 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12000	CpG island 12000	322 bp proximal
Rr562107	regulatory region 562107	588 bp proximal
Rr562108	regulatory region 562108	1835 bp proximal
Tcp11l1	t-complex 11 like 1	Intron