rs27413286 SNP Detail

Summary

• ID
  rs27413286
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:97063294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGAATCC GCACATTAAT
  CTCCATCATT ATCATCATTT TGTGGATTTT TTTTTTAATG TCAATAGGAT AGGTCATGAG
  AATATAGATC ACTTAAGAAG CAGGACTTTG GTCTCTCGCT TGTTTGTGGA AGGAATTCAC
  AGATGTGCAG AGTTTGTTAT TTTTAATAAG CACCCAGAGA AGCATCACTT TAGAGGTCAC
  R
  TGATGTGGGT TTGTTCTTCA TGTGACACCT GCCGCTCTGA ATTCTCCATG ATGCGGGTGC
  ATTTTTTTCT GATGTCAGTC TGGGGATACT TTCACAACTT TGTTTTTCTA GTAGCCATAT
  GGAGCTTGTA CATGCCCAGT CTCAAGGTTT GACAGAGCAT TTCACTGGAT GGTAGAAGCA
  GGGACATGCT GTTCACCTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37589319	NES09084204	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	A	G		A	A	G		A
ss45318501	mCV24368817	ABI	CRAMUS_MOUSE	f	SNP	G	A				A
ss146991565	ENSMUSSNP7108444	ENSEMBL	ENSEMBL_Sanger	f	SNP		A				A
ss320412930	CHEV_2_97073106	CHEVERUD	SCREENING_POP	f	SNP									G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27413286					SNP	G	A	A	A	A	A	A	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37589319	NES09084204	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:97063294 () rs orientation: forward

Symbol	Name	Function Class
Lrrc4c	leucine rich repeat containing 4C	Intron
Rr561442	regulatory region 561442	within coordinates