rs27412213 SNP Detail

Summary

• ID
  rs27412213
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:128080921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTTGATC CAAGGCCACT
  GAAAATATAC ACGCTACTGG AACTTGTTTA TACTTACTGA TGACAACATT CTTCACAAAG
  CTACCATGTG GAAGCAACCA AATGTCCCTT AAATATGCCT GCAACAGCAC GGATAGACCT
  CAAAGACACC AGGTGAAAGC AATCAGAGCA AATGGCCTCA TGGACACGAT TGCCCCCACA
  K
  CTGGGCACAC TCCTTTGCAC ATCATTTGAG AATGGCTTCA CTTTTCCATG GATTGTCCTG
  TTGGTGGATT TATAGACATG TTGGAGAAGG AAAATGATTT TGTTTCACTG AAACCCCACT
  CCTCACCGTC CACCAGGCCA TAATGACAGC ATACATATTA GATGGCCCAT AAGACAGCAC
  TCATATTAGA TAGCCCATAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37626532	NES08997022	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27412213					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37626532	NES08997022	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128080921 () rs orientation: forward

Symbol	Name	Function Class
Gm75220	predicted gene, 75220	690 bp upstream
Rr373833	regulatory region 373833	870 bp upstream
Rr564683	regulatory region 564683	1103 bp proximal
Rr564684	regulatory region 564684	1674 bp proximal