rs27412212 SNP Detail

Summary

• ID
  rs27412212
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:128081050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGATAGACC TCAAAGACAC
  CAGGTGAAAG CAATCAGAGC AAATGGCCTC ATGGACACGA TTGCCCCCAC AGCTGGGCAC
  ACTCCTTTGC ACATCATTTG AGAATGGCTT CACTTTTCCA TGGATTGTCC TGTTGGTGGA
  TTTATAGACA TGTTGGAGAA GGAAAATGAT TTTGTTTCAC TGAAACCCCA CTCCTCACCG
  Y
  CCACCAGGCC ATAATGACAG CATACATATT AGATGGCCCA TAAGACAGCA CTCATATTAG
  ATAGCCCATA AACATCCAGT TGAGGTTTTA TATCTCAAAT GAGCTAAACC ATTCAGAAAT
  GTAAAATAAT AATGACAGCC CACCAAAAAA ACTGTCAGTC CAACCCTTGC TAGCTTCATG
  GTGGCTAGGA AACAAAGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37626531	NES08997024	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27412212					SNP	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37626531	NES08997024	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128081050 () rs orientation: forward

Symbol	Name	Function Class
Gm75220	predicted gene, 75220	561 bp upstream
Rr373833	regulatory region 373833	741 bp upstream
Rr564683	regulatory region 564683	974 bp proximal
Rr564684	regulatory region 564684	1545 bp proximal