rs27412209 SNP Detail

Summary

• ID
  rs27412209
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:128081377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAA TATCTTGGAG TTATGGATCC
  R
  TCAGTGGGTT ACGTCATGGA TTATA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37626528	NES08997030	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	A	G	A		G	A	G	G		A	G	G	A		G
ss45329531	mCV22517780	ABI	CRAMUS_MOUSE	f	SNP		G	G					G		A
ss147555500	ENSMUSSNP5808791	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							A
ss320501959	CHEV_2_128065193	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27412209					SNP	G	G	G	G	A	G	A	G	G	A	G	G	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37626528	NES08997030	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128081377 () rs orientation: forward

Symbol	Name	Function Class
Gm75220	predicted gene, 75220	234 bp upstream
Rr373833	regulatory region 373833	414 bp upstream
Rr564683	regulatory region 564683	647 bp proximal
Rr564684	regulatory region 564684	1218 bp proximal
Rr564685	regulatory region 564685	1795 bp proximal