rs27412208 SNP Detail

Summary

• ID
  rs27412208
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:128081516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCCAGTGAC TTTCAATGAT AGACTCCACC AGCAGGAGAC
  CATCCCCTCA ACAGGAGCTT CTAGCTGTCT ACACCATGTT CAAGCCATAA TTCTTCTGGT
  Y
  CAACTTCTGA TCCCAGACCA AGTGTTGGCA TCAGGACATT CCAAACCTAT GAGGCAACAG
  CACGACCTGT GACCTACAGA CCGGTTGCCA AGACAATGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37626527	NES08997032	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	T		C	T	C	C	T	C	C	C	C
ss45281244	mCV22517779	ABI	CRAMUS_MOUSE	f	SNP		C	C					C		T
ss147555505	ENSMUSSNP3789327	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27412208					SNP	C	C	C	C	C	C	T	C	C	T	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37626527	NES08997032	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128081516 () rs orientation: forward

Symbol	Name	Function Class
Gm75220	predicted gene, 75220	95 bp upstream
Rr373833	regulatory region 373833	275 bp upstream
Rr564683	regulatory region 564683	508 bp proximal
Rr564684	regulatory region 564684	1079 bp proximal
Rr564685	regulatory region 564685	1656 bp proximal