rs27412205 SNP Detail

Summary

• ID
  rs27412205
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:128081606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTG TGACCTACAG ACCGGTTGCC
  W
  AGACAATGAC CACCATATTC CCAGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37626524	NES08997036	PERLEGEN	MM_PANEL2	f	SNP	T		A	T	A	T	A		A	A	T	T	A	T	T	A	A
ss45293011	mCV22517760	ABI	CRAMUS_MOUSE	f	SNP		T	A					A		A
ss147555515	ENSMUSSNP5330844	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27412205					SNP	T	T	A	T	A	T	A	A	A	A	T	T	A	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37626524	NES08997036	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128081606 () rs orientation: forward

Symbol	Name	Function Class
Gm75220	predicted gene, 75220	5 bp upstream
Rr373833	regulatory region 373833	185 bp upstream
Rr564683	regulatory region 564683	418 bp proximal
Rr564684	regulatory region 564684	989 bp proximal
Rr564685	regulatory region 564685	1566 bp proximal