rs27412203 SNP Detail

Summary

• ID
  rs27412203
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:128082283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGATGAG CTCTCCTAGT
  GCAAAACAAC TTCCACTGTG GTAAATGCCA GCACTTTATC AGCGCTTTAT CATTTGTTCT
  CTCCACCTGA CCTCCACTTC TCAAGGCAAA TCAGACTGGT GCACAGTACA CGTGGGACAG
  CCTCAATACA TTTTTCTTTA TTTAAAAAAA GAAAAACAAA GTTGGTTGAA TTTGCCCAAG
  Y
  GGGTGGTATG GCTTCCAGGT ATAAGTCTCT TTCTCTGAAG TAATAAATTG AGCCTGAAGA
  CACGAAGAAG GACAACTGGC TCTTGGCAAG ACAGCCTGAA GTACACGCTG AGCACAGCCC
  AACTAGGTGG ATGCTGCGAC TGGACCACCG ACAACAGAAG CTGCTCTCCC TGGATAGCAC
  ACAAACAGGG AGAAAGGTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37626522	NES08996993	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27412203					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37626522	NES08996993	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128082283 () rs orientation: forward

Symbol	Name	Function Class
Gm75220	predicted gene, 75220	within coordinates
Rr373833	regulatory region 373833	within coordinates
Rr564683	regulatory region 564683	within coordinates
Rr564684	regulatory region 564684	312 bp proximal
Rr564685	regulatory region 564685	889 bp proximal