rs27412200 SNP Detail

Summary

• ID
  rs27412200
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:128082426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATACATTT TTCTTTATTT
  AAAAAAAGAA AAACAAAGTT GGTTGAATTT GCCCAAGCGG GTGGTATGGC TTCCAGGTAT
  AAGTCTCTTT CTCTGAAGTA ATAAATTGAG CCTGAAGACA CGAAGAAGGA CAACTGGCTC
  TTGGCAAGAC AGCCTGAAGT ACACGCTGAG CACAGCCCAA CTAGGTGGAT GCTGCGACTG
  R
  ACCACCGACA ACAGAAGCTG CTCTCCCTGG ATAGCACACA AACAGGGAGA AAGGTACCTG
  AAGGGAGGGC GGGTGCTGAG CATGGGGGTC TCAGAGAGGC CAGAGGGTAG TATGCAGCAG
  GAAGTTCCCA GGAGGAAAAG CAGCCTCAGG GTAAAGTTAC CAGCCTCCGC TGCACCCTGG
  AAACCGGTCT TTCTGGCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37626519	NES08996997	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27412200					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37626519	NES08996997	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128082426 () rs orientation: forward

Symbol	Name	Function Class
Gm75220	predicted gene, 75220	within coordinates
Rr373833	regulatory region 373833	within coordinates
Rr564683	regulatory region 564683	within coordinates
Rr564684	regulatory region 564684	169 bp proximal
Rr564685	regulatory region 564685	746 bp proximal