rs27412196 SNP Detail

Summary

• ID
  rs27412196
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:128083049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGC TGTTATTGCG AAAAGACAGG
  Y
  TATAGAGAAG AAATTACATA AAAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37626515	NES08997001	PERLEGEN	MM_PANEL2	f	SNP		T	T	C	T		C		T	T		C	T	T		T
ss45296493	mCV22517747	ABI	CRAMUS_MOUSE	f	SNP	T	T				T		C
ss147555520	ENSMUSSNP6062098	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T						C
ss320501964	CHEV_2_128066865	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27412196					SNP	T	T	T	C	T	T	C	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37626515	NES08997001	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128083049 () rs orientation: forward

Symbol	Name	Function Class
Gm75220	predicted gene, 75220	within coordinates
Rr373833	regulatory region 373833	within coordinates
Rr564683	regulatory region 564683	455 bp distal
Rr564684	regulatory region 564684	within coordinates
Rr564685	regulatory region 564685	123 bp proximal