rs27412195 SNP Detail

Summary

• ID
  rs27412195
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:128083195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTGGACA TGGAAGTCCC
  AGGGCAGAGG AAGCTGTTAT TGCGAAAAGA CAGGTTATAG AGAAGAAATT ACATAAAAAA
  CCCAGCGGAT CACTGACAAT GGACACTGAG CCAGCCACAG GATGCTAACA GGGATTGTTA
  ACATTTAATT TTTATTTCTT GTTCACACTG CTATCCAACT GTTTCTTCTT AGGACAGAAC
  K
  TCTTCCTTGA GAGTGAATTT TGGTGCAGAT AAAGCAGAAA GGAAGAGTTG GGAGGGAAGA
  ACAGAGGGGG AGGGGAGGAC AGAGGGGAGG GGGTGTTTCT TCTCAGGCTT TAAACGCTGT
  TGTTGCCTGC AAAGGGTTTG TCCTAAATGA CATCATCCGA GTGCCTGCTG TGTACCTCTG
  GGACAAACAG ACTAGACAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37626514	NES08997002	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27412195					SNP	G	G	G	G	G	T	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37626514	NES08997002	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128083195 () rs orientation: forward

Symbol	Name	Function Class
Gm75220	predicted gene, 75220	within coordinates
Rr373833	regulatory region 373833	within coordinates
Rr564683	regulatory region 564683	601 bp distal
Rr564684	regulatory region 564684	141 bp distal
Rr564685	regulatory region 564685	within coordinates