rs27407578 SNP Detail

Summary

• ID
  rs27407578
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102418431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGTTCTA GAAGGTGGGT
  AAATTTTAAA GTGCTGGTCT CTACTGCTGA TTTAAATTTT CTGTGCTACT TTAATTGGAT
  TCCAGGAAAT TTAATTTGGG GCTTTGTAGA TTTTTTTTTA ACCAGGCTGG TTAGCTGTGT
  GATATAACCT GCTTTTCACC TTGGCAGCTA CTCTATGCGA TGGTGGGAGA AAACAATGAT
  Y
  AGGGTACAAA CTATAGAATG CTATCTATCC TATGGCACTG AATAAGTGTG ATAAGTACAT
  CTGAAGTATT TAGTGCTTTG CTTAGAGATA GTGAAAGCCC AATGTTATGT GCAGAAGTGA
  TATATTGACT TGTTTTCCAT ATACCTCTAA TTGATAAGAT GGTAGGAAGT CCAAATACAA
  AACTGCTTTC AGTAATAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37577304	NES09062639	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C		T	C	C	T		T	C	C	T		C
ss45242157	mCV23732815	ABI	CRAMUS_MOUSE	f	SNP		T					C		C
ss147116528	ENSMUSSNP3500745	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
ss320439065	CHEV_2_102428243	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27407578					SNP	C	T	C	C	C	C	C	T	C	C	T	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37577304	NES09062639	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102418431 () rs orientation: forward

Symbol	Name	Function Class
Pamr1	peptidase domain containing associated with muscle regeneration 1	Intron
Rr373606	regulatory region 373606	within coordinates
Rr561706	regulatory region 561706	1873 bp proximal