rs27407577 SNP Detail

Summary

• ID
  rs27407577
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102419451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAGTAGCT TCTGATATTG
  CTAGGAGACA CAATTTCCAA ACAAACTCCC TGATCTTCTT GCATTTATGA TCTTTCTGCC
  CCCTCCTCTA TAATGTTCCT GAGTTTTAGG TACAGAAATA TTCTGTAAAT TTATCTATTG
  GAACTACATT CTGGTTAGCT GTGATTTTTT GCAGTGGTCT CTGTCTGTTG CAAAGTTAGG
  R
  GAACTGATTT CAGTTTGTGT CAAGCTGACA AAAACTAACC CAGAAGGCCA GAAAAGTGAC
  ACCTGACAGG TAATTCTAGC AATATATCAA AGGCTCATTG AAGTGGAGCC AGTGCCGTGT
  GCAAAGGTCA TAGCTAGGAA TGCTACTTCA GTGGCTAGGT GAGAGGAAAG AGCAAGTGAT
  GAGAGGAGCT TAAAGAGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37577303	NES09062581	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	A	A		G	A	A	G		G	A	A	G		A
ss45245077	mCV23733086	ABI	CRAMUS_MOUSE	f	SNP			G					A
ss147116554	ENSMUSSNP6709405	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							A
ss320439079	CHEV_2_102429263	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27407577					SNP	A	A	G	A	A	A	A	A	G	A	A	G	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37577303	NES09062581	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102419451 () rs orientation: forward

Symbol	Name	Function Class
Pamr1	peptidase domain containing associated with muscle regeneration 1	Intron
Rr373606	regulatory region 373606	676 bp downstream
Rr561706	regulatory region 561706	853 bp proximal
Rr561707	regulatory region 561707	1085 bp proximal