rs27407575 SNP Detail

Summary

• ID
  rs27407575
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102419534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCTATAA TGTTCCTGAG
  TTTTAGGTAC AGAAATATTC TGTAAATTTA TCTATTGGAA CTACATTCTG GTTAGCTGTG
  ATTTTTTGCA GTGGTCTCTG TCTGTTGCAA AGTTAGGAGA ACTGATTTCA GTTTGTGTCA
  AGCTGACAAA AACTAACCCA GAAGGCCAGA AAAGTGACAC CTGACAGGTA ATTCTAGCAA
  K
  ATATCAAAGG CTCATTGAAG TGGAGCCAGT GCCGTGTGCA AAGGTCATAG CTAGGAATGC
  TACTTCAGTG GCTAGGTGAG AGGAAAGAGC AAGTGATGAG AGGAGCTTAA AGAGCAAGAT
  ACCACTCATT GACACGCTAG AAGTATAGCG AGGGACCTCA AGTTCGTCTG AATAGCAGGT
  AGCCAGAGAT ATCCCATGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37577301	NES09062583	PERLEGEN	MM_PANEL2	f	SNP	T		G	T	T	T	T	G	T	T	G		G	T	T	G		T
ss147116557	ENSMUSSNP4778872	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G						T
ss320439080	CHEV_2_102429346	CHEVERUD	SCREENING_POP	f	SNP												G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27407575					SNP	T	T	G	T	T	T	T	G	T	T	G	G	G	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37577301	NES09062583	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102419534 () rs orientation: forward

Symbol	Name	Function Class
Pamr1	peptidase domain containing associated with muscle regeneration 1	Intron
Rr373606	regulatory region 373606	759 bp downstream
Rr561706	regulatory region 561706	770 bp proximal
Rr561707	regulatory region 561707	1002 bp proximal