rs27407571 SNP Detail

Summary

• ID
  rs27407571
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102419654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGATTTCA GTTTGTGTCA
  AGCTGACAAA AACTAACCCA GAAGGCCAGA AAAGTGACAC CTGACAGGTA ATTCTAGCAA
  TATATCAAAG GCTCATTGAA GTGGAGCCAG TGCCGTGTGC AAAGGTCATA GCTAGGAATG
  CTACTTCAGT GGCTAGGTGA GAGGAAAGAG CAAGTGATGA GAGGAGCTTA AAGAGCAAGA
  Y
  ACCACTCATT GACACGCTAG AAGTATAGCG AGGGACCTCA AGTTCGTCTG AATAGCAGGT
  AGCCAGAGAT ATCCCATGCA TGGCTTTCCT AAAGTCTCTG TCAGTTGTGT GCTGGGTTGA
  GCTTCAGTAT AAAAGCTGGC TGCAGAGTCT GACTTGTTGG GTTGCCAAAG GCACCACTCT
  AAAAGTCGAG CTTTCTTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37577297	NES09062588	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	T	T	C	T	T	C		C	T	T	C		T
ss45262241	mCV23733093	ABI	CRAMUS_MOUSE	f	SNP			C						T
ss147116578	ENSMUSSNP7033705	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
ss320439084	CHEV_2_102429466	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27407571					SNP	T	T	C	T	T	T	T	C	T	T	C	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37577297	NES09062588	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102419654 () rs orientation: forward

Symbol	Name	Function Class
Pamr1	peptidase domain containing associated with muscle regeneration 1	Intron
Rr373606	regulatory region 373606	879 bp downstream
Rr561706	regulatory region 561706	650 bp proximal
Rr561707	regulatory region 561707	882 bp proximal