rs27407570 SNP Detail

Summary

• ID
  rs27407570
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102419699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAAAAGT GACACCTGAC
  AGGTAATTCT AGCAATATAT CAAAGGCTCA TTGAAGTGGA GCCAGTGCCG TGTGCAAAGG
  TCATAGCTAG GAATGCTACT TCAGTGGCTA GGTGAGAGGA AAGAGCAAGT GATGAGAGGA
  GCTTAAAGAG CAAGATACCA CTCATTGACA CGCTAGAAGT ATAGCGAGGG ACCTCAAGTT
  Y
  GTCTGAATAG CAGGTAGCCA GAGATATCCC ATGCATGGCT TTCCTAAAGT CTCTGTCAGT
  TGTGTGCTGG GTTGAGCTTC AGTATAAAAG CTGGCTGCAG AGTCTGACTT GTTGGGTTGC
  CAAAGGCACC ACTCTAAAAG TCGAGCTTTC TTCAGGACAA CAGAGTTAGC TCAGAGAAGA
  TACCGATCCC ATTAGACAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37577296	NES09062589	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C	T	C	C	T		T	C	C	T		C
ss147116584	ENSMUSSNP4693804	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						C
ss320439085	CHEV_2_102429511	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27407570					SNP	C	C	T	C	C	C	C	T	C	C	T	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37577296	NES09062589	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102419699 () rs orientation: forward

Symbol	Name	Function Class
Pamr1	peptidase domain containing associated with muscle regeneration 1	Intron
Rr373606	regulatory region 373606	924 bp downstream
Rr561706	regulatory region 561706	605 bp proximal
Rr561707	regulatory region 561707	837 bp proximal