rs27400149 SNP Detail

Summary

• ID
  rs27400149
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153473446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGATGCT TGCTTCAATC
  CCTGGAACCT ACACAAAGAA GTGTCAAAGC TCACTTCCTT AGGTTGTTCT CTGACCTCCC
  CCACAACATA TAAAATGTAA TACTTTGAAA TAACCTTTAA AAAAAAATCA GTAGAATCTC
  TCTTTCTCCT CCTCTAACCC CTCCAAATAG GAGTCTTCCA GAAATCAGTG GCAACAGCAA
  R
  ATCTAGCCAT TTCCCTGGCC TTTGAAGTTA GACATTTGGT TGTGAATTCC TGGTTCCAGT
  TTTGCAATTT TTCTGCTTCC ACCTTTCTTT CAAGAGGTGG CAATGACAGG TATGGACTAC
  TAATAAATTC TATTTTTGTT ATTTACTTAT TTTGATATAG GGTCTCACTA TGCAGCTCTG
  GACAGTCTAA AACTCATGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37559380	NES08918868	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	A	G		A		A	A	A	A	A	A	G
ss45207000	mCV23862301	ABI	CRAMUS_MOUSE	f	SNP		G	A					A		A
ss147999451	ENSMUSSNP1359764	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27400149					SNP	G	G	A	A	G	A	G	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559380	NES08918868	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153473446 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Commd7	COMM domain containing 7			Intron
				Noncoding-Transcript-Variant
Cpgi12491	CpG island 12491			772 bp proximal
Rr567709	regulatory region 567709			1070 bp distal
Rr567710	regulatory region 567710			1204 bp proximal
Tssr26915	transcription start site region 26915			1153 bp downstream
Tssr26916	transcription start site region 26916			1249 bp downstream