rs27400148 SNP Detail

Summary

• ID
  rs27400148
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153473876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGCTGAAG TTAAGGTGAA
  TACTACTCTG TGTTTGTTTG TTTGTTTGTT TTTAATTCTT CAAACTGGCC TGTGTGTGTC
  TGGGGTTGAG GGCCCCACTT CCTGGGAAGC TAAGACCCCG TCAGGGAAAC ATCTTGAGGG
  ACGAAGGGTT ATTTATCTAT TTTAAATGTT TTTTTGACAG GAGGTCTCAT GATGTTCAGA
  S
  GAGGCTTGAA CAAGATACTT AATCAAGCCG GGCGGTGGTG GCACACACCT TTAATCCCAG
  CACTTGGGAG ACAGAGGCAG GCGGATTTCT GAGTTCGAGG CCAGCCTGGT CTACAGAGTG
  AGTTCCAGCA CAGCAAGGGC AAATCCTGAC TCGGAAAAAA AAAAAAAAAA AAACCAAACC
  AACCAACCAA CCAAAAAAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37559379	NES08918853	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27400148					SNP	C	C	C	C	C	C	G	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559379	NES08918853	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153473876 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Commd7	COMM domain containing 7			Intron
				Noncoding-Transcript-Variant
Cpgi12491	CpG island 12491			342 bp proximal
Rr567709	regulatory region 567709			1500 bp distal
Rr567710	regulatory region 567710			774 bp proximal
Tssr26915	transcription start site region 26915			723 bp downstream
Tssr26916	transcription start site region 26916			819 bp downstream