rs27400147 SNP Detail

Summary

• ID
  rs27400147
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153474097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTTCCAGCA CAGCAAGGGC AAATCCTGAC TCGGAAAAAA
  AAAAAAAAAA AAACCAAACC AACCAACCAA CCAAAAAAGA TACTTAGTGA AAGCTGGATC
  Y
  TAAGTCCCAC CTCCTAAGTG CCGGCATTGA CAAGGACCAC TGTCACCCGT TTATTCCGTG
  CAGACGCCCC TCACTTGGCC AATTCCTGCA ATGTGAATA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37559378	NES08918844	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T	T		T		C	T	T	T	T
ss45290488	mCV23862313	ABI	CRAMUS_MOUSE	f	SNP		T	T					C		T
ss147999470	ENSMUSSNP7104507	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27400147					SNP	T	T	T	C	T	T	T	C	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559378	NES08918844	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153474097 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Commd7	COMM domain containing 7			Intron
				Noncoding-Transcript-Variant
Cpgi12491	CpG island 12491			121 bp proximal
Rr567709	regulatory region 567709			1721 bp distal
Rr567710	regulatory region 567710			553 bp proximal
Tssr26915	transcription start site region 26915			502 bp downstream
Tssr26916	transcription start site region 26916			598 bp downstream