rs27400145 SNP Detail

Summary

• ID
  rs27400145
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153474361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCCCCTCA CTTGGCCAAT
  TCCTGCAATG TGAATAGGAG GTGGCATTCG GAGCTCTGCA ACAGGGACCA GGCCTTCAAA
  ACAGGCATGG TTCCTTTCCT GGATTGGAAA GGGGTGTGGT CACCGGTCCT GTCTGAGCCT
  CTTCCGGCTC AGGCCCAGGG CCCCACTTAG GCCGGACCAC ACTGACACCC ACAACCCGTT
  K
  GCAGTCGATT TGCCCTCCCT AATCTATTCA AACCGGGGGC CGCTTGGAAT CCCCTCATTC
  CCTCCTCTAG GAGCCTACAA ATCTAAGTCC CCACCTCCGG AGTGCGTCCG CCCATTCCTG
  AGCCCGCCCG CCCCCGTCCA GGCGAGCCCC ACCTGAGCGC CCAGCTGGTT CAGCTGCTGC
  ATGTCTCCGC GCACGGCCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37559376	NES08918846	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	G	T	T		T	T	T	T	G
ss45272403	mCV23862314	ABI	CRAMUS_MOUSE	f	SNP		G	T					T
ss147999479	ENSMUSSNP3561804	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27400145					SNP	G	G	T	T	G	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559376	NES08918846	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153474361 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Commd7	COMM domain containing 7			Intron
				Noncoding-Transcript-Variant
Cpgi12491	CpG island 12491			within coordinates
Rr567709	regulatory region 567709			1985 bp distal
Rr567710	regulatory region 567710			289 bp proximal
Tssr26915	transcription start site region 26915			238 bp downstream
Tssr26916	transcription start site region 26916			334 bp downstream