rs27400143 SNP Detail

Summary

• ID
  rs27400143
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153474726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACGCTCGCT TCCTCCACCC GGGTCTCGCT GCGCTTCCGC
  AGCCGCACTT TCGCCACACT CCCAGCCGCG GTTCTCGTGA CAGCGCACGC GCGACCGCCG
  S
  GTTCCAGGAA CCGCTCTGAG CAACCCAGTA AGATTCCAAG TCTCTGCCTG GGAGACCCTG
  AATATAAAGC ACTTGTCCCA TCTGAGCCTC AGTTTCACA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37559374	NES08918848	PERLEGEN	MM_PANEL2	f	SNP	G		C	G	G	C		G		G	G	C	G
ss45374475	mCV23862340	ABI	CRAMUS_MOUSE	f	SNP		G	C				G		C
ss147999504	ENSMUSSNP7060035	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27400143					SNP	G	G	C	G	G	C	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559374	NES08918848	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153474726 () rs orientation: forward

Symbol	Name	Function Class
Commd7	COMM domain containing 7	25 bp upstream
Rr567710	regulatory region 567710	within coordinates
Tssr26915	transcription start site region 26915	49 bp upstream
Tssr26916	transcription start site region 26916	13 bp upstream