rs27400140 SNP Detail

Summary

• ID
  rs27400140
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153475178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTCCCAGAA AATACTAAAT GCCCACCAGA GGCCAAGCAC
  TGATAACAGG GAAGGGCATA AACCAGACTA TGGTGTCCCT CTGAGAGTCT ACACCAGAGT
  K
  AAGAAGCAGA TCTGAGACTT GGACAGGCAT TAGTGTCATC TGGACAATTT CATGAAACCG
  CCAATGGCTG GGTCCCACCC CCAATCTCTG AGTTCTGAG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37559371	NES08918831	PERLEGEN	MM_PANEL2	f	SNP	G	T	G	G	T	G		G		G	G	T	T	G
ss45218858	mCV23862341	ABI	CRAMUS_MOUSE	f	SNP		T					G		T
ss147999511	ENSMUSSNP1844536	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27400140					SNP	G	T	G	G	T	G	G	G	T	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559371	NES08918831	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153475178 () rs orientation: forward

Symbol	Name	Function Class
Commd7	COMM domain containing 7	477 bp upstream
Cpgi12491	CpG island 12491	308 bp distal
Rr567710	regulatory region 567710	within coordinates
Tssr26915	transcription start site region 26915	501 bp upstream
Tssr26916	transcription start site region 26916	465 bp upstream