rs27400139 SNP Detail

Summary

• ID
  rs27400139
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153475428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATGAAACC GCCAATGGCT
  GGGTCCCACC CCCAATCTCT GAGTTCTGAG CAGAAAGGCT TGGGGAACAG CTGGATAATG
  TACATTTCCC ATTAATTCCC AGGAACCACA CTTGGAGAGC CTTTGGAATA GAGGAATTTG
  ATCCAGCTAA GGAATGTTGA GAGCCTTGGG CGAGGTGGTG GTCAGAAGGG TTGAGATAGT
  R
  AGACCCAAGG CAATCATGAC GGAGCTGGGG TCAATCTCAG AGCACGTACC CAGCCCGTTC
  ACCTTCAGAA CTCAATCCCT GGCAAGGTGG AAAGACCCAA GCCTGAGTTC TCTGCAGCCA
  CTGGGTGAGT GCTGAGTTCA CCCTCATTAG ACCTGAGAAA ATAGGGGTAT ATACTCCCTG
  GGTGCTACGC AAGGGCTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37559370	NES08918814	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27400139					SNP	G	G	G	G	G	G	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559370	NES08918814	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153475428 () rs orientation: forward

Symbol	Name	Function Class
Commd7	COMM domain containing 7	727 bp upstream
Cpgi12491	CpG island 12491	558 bp distal
Rr567710	regulatory region 567710	237 bp distal
Tssr26915	transcription start site region 26915	751 bp upstream
Tssr26916	transcription start site region 26916	715 bp upstream