rs27397714 SNP Detail

Summary

• ID
  rs27397714
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93700137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCTGTGT GGCTTTGGCA
  AGCCTTCCTT TCTCCTTGGG AAAGACAGAG GCCAGGAAAA CTACATCCCA GGTGGTGTGG
  AGACTAACTG GAGGATGGAT GTGTGCTGAC ATGACGGGGC AGGAAGGGTT GTATGAAATG
  TCTCAGCTGT GACTGAGCCT CCCGTGACTG TCTAGGGACA GATGTGGACC CAAAGTAGCC
  Y
  ATCCTTCCAG AATACCCATG CCCTGCTCTC AAACTTTGAG GGAAAGATGA TCCAGGTGTG
  GTGGCACGTG CATTTAATCC CAGCACGTGG GAAGCAGAGA CAGGAGGGCC TCCTTGAGTT
  CAGGTACAGC CTGGTTTATG TAGTGAGACC CTGGGCTACA GTTGGGTGCT GGTCTAGGGA
  CCCCAGGACT CTGGACTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
ss37597038	NES09091901	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
rs27397714					SNP	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37597038	NES09091901	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93700137 () rs orientation: forward

Symbol	Name	Function Class
Accsl	1-aminocyclopropane-1-carboxylate synthase (inactive)-like	Intron
Gm75246	predicted gene, 75246	within coordinates
Rr561298	regulatory region 561298	1036 bp distal
Rr561299	regulatory region 561299	903 bp proximal
Rr561300	regulatory region 561300	999 bp proximal
Rr561301	regulatory region 561301	1215 bp proximal
Tssr25303	transcription start site region 25303	689 bp upstream
Tssr25304	transcription start site region 25304	417 bp upstream