rs27392990 SNP Detail

Summary

• ID
  rs27392990
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:103831333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTAGGTCAG CCAAAGCTAC CTAGTGAGAT CCTGTCATTC
  AAAAGAAAAA GTAACTTCTT GTTCAGAATA CATTTTTAAG TGATATTATA TCTCCTGTTG
  R
  TTTTGACTAT GGATGGTTTT CCTTTGCATA GAGGTACAAC AAAATACATG AAACTGCATG
  CCTTTAATCC TAGCACTCAG AAGGCAGAGG CAGGTGAAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37571118	NES09078931	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A		G	A	G	A		G	G	G
ss45315434	mCV23245482	ABI	CRAMUS_MOUSE	f	SNP	A				G		A
ss147141843	ENSMUSSNP5769851	ENSEMBL	ENSEMBL_Sanger	f	SNP	A						A
ss320443516	CHEV_2_103841145	CHEVERUD	SCREENING_POP	f	SNP										A				G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27392990					SNP	A	A	A	A	G	G	A	G	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37571118	NES09078931	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103831333 () rs orientation: forward

Symbol	Name	Function Class
4931422A03Rik	RIKEN cDNA 4931422A03 gene	Intron
Rr397165	regulatory region 397165	258 bp upstream
Rr562001	regulatory region 562001	203 bp proximal
Rr562002	regulatory region 562002	290 bp proximal
Rr562003	regulatory region 562003	1680 bp proximal
Rr562004	regulatory region 562004	1932 bp proximal
Rr562005	regulatory region 562005	1991 bp proximal