rs27392989 SNP Detail

Summary

• ID
  rs27392989
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:103832472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAACCCT GTCTTGAAAA
  ACCAAACAAT AACAACAATG ACAAACTTCT CTCACAGGAA GACATTTCTA ACTATCATGA
  CCTTTGTGGA ACAGGATCTG GTGTGAGTCA CTCATACTCT GGGAGGAAAG ATAGGAGGTG
  GGGATAGGAC ATGCAATTCT CCATCTGTAG AAAGGCTGCC CGTGTTAGCA AGTAAGACAG
  R
  GCCTTGAGAT TTTCTCACTT GCCCACGTAG GAGGAAAGGG GTAGATGTGG CATCCCTTCA
  GTGCTAAAAA GCATCACATC ATCCCAAGAA TAGTCAGACA CTCAAGAGTT GCCTCCAGAA
  CTCTCAGAAT TGTTATGGAC CAGGCTTTAG CATGGGGCAG CACTATCTAC ATGTGTGCGC
  ATGCCTTGGG GTTTCCTCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37571117	NES09078885	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27392989					SNP	A	A	A	A	A	G	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37571117	NES09078885	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103832472 () rs orientation: forward

Symbol	Name	Function Class
4931422A03Rik	RIKEN cDNA 4931422A03 gene	Intron
Cpgi11988	CpG island 11988	1233 bp proximal
Rr397165	regulatory region 397165	580 bp downstream
Rr562001	regulatory region 562001	754 bp distal
Rr562002	regulatory region 562002	828 bp distal
Rr562003	regulatory region 562003	541 bp proximal
Rr562004	regulatory region 562004	793 bp proximal
Rr562005	regulatory region 562005	852 bp proximal