rs27392988 SNP Detail

Summary

• ID
  rs27392988
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:103832635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTAGAAA GGCTGCCCGT
  GTTAGCAAGT AAGACAGAGC CTTGAGATTT TCTCACTTGC CCACGTAGGA GGAAAGGGGT
  AGATGTGGCA TCCCTTCAGT GCTAAAAAGC ATCACATCAT CCCAAGAATA GTCAGACACT
  CAAGAGTTGC CTCCAGAACT CTCAGAATTG TTATGGACCA GGCTTTAGCA TGGGGCAGCA
  M
  TATCTACATG TGTGCGCATG CCTTGGGGTT TCCTCAAGAC GATGGCAGGG GTTAGGCAGG
  TGAGAATTAG GTGGGCAGGT GTTCTGAGAA AGGGACAGGG TGCTCAGGTG GCAGGAGGAT
  ATCCCTCCCC TTCTTTTGGG GTCCTGTATG GTTACTGCTG CCATGGTGGT GTACCCTCCT
  TGTCAGTGTC TTTCTTGGAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37571116	NES09078888	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27392988					SNP	C	C	C	C	C	A	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37571116	NES09078888	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103832635 () rs orientation: forward

Symbol	Name	Function Class
4931422A03Rik	RIKEN cDNA 4931422A03 gene	Intron
Cpgi11988	CpG island 11988	1070 bp proximal
Rr397165	regulatory region 397165	743 bp downstream
Rr562001	regulatory region 562001	917 bp distal
Rr562002	regulatory region 562002	991 bp distal
Rr562003	regulatory region 562003	378 bp proximal
Rr562004	regulatory region 562004	630 bp proximal
Rr562005	regulatory region 562005	689 bp proximal