rs27392987 SNP Detail

Summary

• ID
  rs27392987
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:103832649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGGG GCAGCACTAT CTACATGTGT
  R
  CGCATGCCTT GGGGTTTCCT CAAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37571115	NES09078891	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	G	G		G	A	G	G	G	G	G	G
ss45253537	mCV23245471	ABI	CRAMUS_MOUSE	f	SNP	G	A					G
ss147141853	ENSMUSSNP1132919	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27392987					SNP	G	A	A	A	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37571115	NES09078891	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103832649 () rs orientation: forward

Symbol	Name	Function Class
4931422A03Rik	RIKEN cDNA 4931422A03 gene	Intron
Cpgi11988	CpG island 11988	1056 bp proximal
Rr397165	regulatory region 397165	757 bp downstream
Rr562001	regulatory region 562001	931 bp distal
Rr562002	regulatory region 562002	1005 bp distal
Rr562003	regulatory region 562003	364 bp proximal
Rr562004	regulatory region 562004	616 bp proximal
Rr562005	regulatory region 562005	675 bp proximal