rs27391666 SNP Detail

Summary

• ID
  rs27391666
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102420252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTAAAAAC AAACCTGGAG
  AGCAGTCCAT TCCGTGAAGT AAACAAACAG AAGAAGGGCC AGATTCCTCT CTGCATCCCA
  TTCTGTCTGG GACACATGGG AGGCTCTGAT TGCATTCTGC CTGTTTTGAA AGCCTCATTC
  CACACAGTGT ATGCCATCAC AGCCGCAAGT ACAAATGGTG CATTTCTTAT GGAAGCCCAG
  Y
  CTGGTCATCA CGGATTACAA TGAACCCTCA AGGAGAATGA AGTCCATCTG TGGAAACAAG
  GTCAAACCCA AGACGACAGC AGTTTCATGT TCTTAGGTAC TTGTTGCCTA TGTAAATTCA
  AAGCAAATTC AGGGGAAGAA GCAATGCATT TGTCTGTCTG CTGAATGCTT ATCTGGAGTT
  GGCCATTATA CTGCCTTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37577292	NES09062597	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27391666					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37577292	NES09062597	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102420252 () rs orientation: forward

Symbol	Name	Function Class
Pamr1	peptidase domain containing associated with muscle regeneration 1	Intron
Rr373606	regulatory region 373606	1477 bp downstream
Rr561706	regulatory region 561706	52 bp proximal
Rr561707	regulatory region 561707	284 bp proximal