rs27391660 SNP Detail

Summary

• ID
  rs27391660
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102420598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATTTGTCT GTCTGCTGAA
  TGCTTATCTG GAGTTGGCCA TTATACTGCC TTCTGTGAAG GTGAAGAGGG GATACCATAC
  TTGGGTGGTC CTATTCTAGC TGGGGCACAA TACAGGTGCT GCAAGGCTGT ACCACTATTT
  TCCCAGTAGA TGGCGCTCAA ACAATCCTTT CCTGCCTGTC CTTTCTCCTG AAGGAGGAGG
  R
  CTTCTTTCCT GTAGGGAAAC TTTCCATTTC CCTTCCTGAG TAACATGTAG AATCTTAGCA
  GGAAAGGGGG AAGGCAGGTC AACACTGAGA GGCTCAGACA TTTGGAACTA GAGAGACAGA
  ACAGCACCTT AATTTGTTAC TGTCTGTACT TTTGATGATA TTGGCACCTC CTTACAGTCG
  TAACAGTCAG TATGTGATCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37577286	NES09062604	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G	G	G	G	G		A	G	G	A		G
ss320439097	CHEV_2_102430410	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27391660					SNP	G	A	G	G	G	G	G	G	G	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37577286	NES09062604	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102420598 () rs orientation: forward

Symbol	Name	Function Class
Pamr1	peptidase domain containing associated with muscle regeneration 1	Intron
Rr373606	regulatory region 373606	1823 bp downstream
Rr561706	regulatory region 561706	within coordinates
Rr561707	regulatory region 561707	41 bp distal