rs27391652 SNP Detail

Summary

• ID
  rs27391652
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102421132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGAGCCAT GGGTGCTATA
  TTACTAAAAG AAAGATCTAT TTCTTTGTAC TTTCTCAATG TTTCAGTTAA AATAATTTCA
  AGTCTACAGG GTTGAAAGAA CTCTCTGTGT CCATGCTGTC TACTTGGATT CACCAATTAT
  CACTTTACAA AACGTAACAT TCTTTCTCTT TTTAATACTA CAAATGTTAA TATTTTGTGT
  Y
  TTATGATGTT AGCATAATCT CTCCTTCCTG TGTTTTCCTC TTGAGAGACA GGGTCTCAGG
  ATGTAGCCCA CTGTGGCCTG GAGGCCTCTG TCTTTCTGCT TCATCCTTCC AAGTGTTGGA
  ATGACAGCTG TATTTCATGA TGCCTAATTT TTCTTTCTGA ACCTCAGATT TGGCCAGTGA
  AGACTTTAAA AACCACCGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss37577278	NES09062612	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs27391652					SNP	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37577278	NES09062612	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102421132 () rs orientation: forward

Symbol	Name	Function Class
Pamr1	peptidase domain containing associated with muscle regeneration 1	Intron
Rr561706	regulatory region 561706	435 bp distal
Rr561707	regulatory region 561707	575 bp distal