rs27388280 SNP Detail

Summary

• ID
  rs27388280
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150627408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCAGAGGG TCTCATCCCA
  GAGCTCCCTG GGAAAGAGTG CCAAGCGGCA GCTTTGAAAG CTGCTCCCCA CATATGGTGA
  AGGGTTATGT GTCTCTGTCA GAGAGGCTGA TCTCTAGCTA TAGGGTATTC CTTCAAAAAC
  TATATATATT CATGTATGAA TGTATGTCTG TATAATTTTA TGATAGCTTG GTGTCTGGTT
  W
  TGTAGGAGTC AATTGGATTA AAGTTTTACT TAGGTAGGTT GAGTCCTGCC TTGTTAAAAA
  AAAAAAAAAA AAAAAAAAAC CACCCACCCT TTATCTGGAA AACAAACATT TGCCAAAACT
  GCCTGAAGGG AAGGTTGTCA CAGAGGACTA AGGTCATGCT GAACCTCCTC TTACAGTTTG
  CTAAGAGAAA AGTTCTTTTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37568212	NES08919310	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	A	A	A	A	A	A	A	A	A	A	A	T
ss147950544	ENSMUSSNP234734	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27388280					SNP	T	T	A	A	A	A	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37568212	NES08919310	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150627408 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12412	CpG island 12412	961 bp proximal
Gm30141	predicted gene, 30141	within coordinates
Pygb	brain glycogen phosphorylase	1308 bp upstream
Rr397385	regulatory region 397385	1058 bp upstream
Rr567100	regulatory region 567100	1162 bp distal
Rr567101	regulatory region 567101	757 bp proximal
Tssr20709	transcription start site region 20709	1252 bp upstream
Tssr20710	transcription start site region 20710	1318 bp upstream